I did a search for "tray icon" and this is reported before.
Unsure if it is fixed in 2.49. Technically yes, every version posted to this forum is "stable". i.e. the dev didn't change lots of code.
But like we saw for anything under
https://testing.tixati.com it's very likely "alpha/beta/testing" will have bugs and stability issues.
From the search the "window manager" appears to be at fault when not on Windows. Windows only comes with 1 shell, though you can replace explorer.exe ... So I'm guessing you're using Linux version. Providing your shell / os version and logs about whatever windowing errors could help. I do not know where these logs would be.